Authors: Carl Zimmer
Ferens, W. A., R. Cobbold, and C. J. Hovde. 2006. Intestinal Shiga toxin–producing
Escherichia coli
bacteria mitigate bovine leukemia virus infection in experimentally infected sheep.
Infect Immun
74 (5):2906-16.
Forster, A. C., and G. M. Church. 2006. Towards synthesis of a minimal cell.
Mol Syst Biol
2:45.
Foster, J. W. 2004.
Escherichia coli
acid resistance: Tales of an amateur acidophile.
Nat Rev Microbiol
2 (11):898-907.
Foster, K. R., K. Parkinson, and C. R. Thompson. 2007. What can microbial genetics teach sociobiology?
Trends Genet
23 (2):74-80.
Francino, M. P. 2005. An adaptive radiation model for the origin of new gene functions.
Nat Genet
37 (6):573-77.
Fricker, E. J., M. Spigelman, and C. R. Fricker. 1997. The detection of
Escherichia coli
DNA in the ancient remains of Lindow Man using the polymerase chain reaction.
Lett Appl Microbiol
24 (5):351-54.
Friedmann, H. C. 2004. From
Butyribacterium
to
E. coli:
An essay on unity in biochemistry.
Perspect Biol Med
47 (1):47-66.
Frost, L. S., R. Leplae, A. O. Summers, and A. Toussaint. 2005. Mobile genetic elements: The agents of open source evolution.
Nat Rev Microbiol
3 (9):722-32.
Gamage, S. D., A. K. Patton, J. F. Hanson, and A. A. Weiss. 2004. Diversity and host range of Shiga toxin–encoding phage.
Infect Immun
72 (12):7131-39.
Gamage, S. D., A. K. Patton, J. E. Strasser, C. L. Chalk, and A. A. Weiss. 2006. Commensal bacteria influence
Escherichia coli
O157:H7 persistence and Shiga toxin production in the mouse intestine.
Infect Immun
74 (3):1977-83.
Gamage, S. D., J. E. Strasser, C. L. Chalk, and A. A. Weiss. 2003. Nonpathogenic
Escherichia coli
can contribute to the production of Shiga toxin.
Infect Immun
71 (6):3107-15.
Gardner, A., S. A. West, and A. Buckling. 2004. Bacteriocins, spite and virulence.
Proc Biol Sci
271 (1547):1529-35.
Gardner, T. S., C. R. Cantor, and J. J. Collins. 2000. Construction of a genetic toggle switch in
Escherichia coli. Nature
403 (6767):339-42.
Ge, F., L. S. Wang, and J. Kim. 2005. The cobweb of life revealed by genome-scale estimates of horizontal gene transfer.
PLoS Biol
3 (10):e316.
Gelman, S.A. 2004. Psychological essentialism in children.
Trends Cogn Sci
8 (9):404-9.
George, R. P., and A. Gomez-Lobo. 2005. The moral status of the human embryo.
Perspect Biol Med
48 (2):201-10.
Gesteland, Raymond F., Thomas Cech, and John F. Atkins. 2006.
The RNA world: The nature of modern RNA suggests a prebiotic RNA.
3rd ed. Cold Spring Harbor Monograph Series 43. Cold Spring Harbor, N.Y.: Cold Spring Harbor Laboratory Press.
Ghannoum, Mahmoud A., and George A. O’Toole. 2004.
Microbial biofilms.
Washington, D.C.: ASM Press.
Gladman, B., L. Dones, H. F. Levison, and J.A. Burns. 2005. Impact seeding and reseeding in the inner solar system.
Astrobiology
5 (4):483-96.
Goehring, N. W., and J. Beckwith. 2005. Diverse paths to midcell: Assembly of the bacterial cell division machinery.
Curr Biol
15 (13):R514-26.
Gorvel, J.P. 2006. Microbiology: Bacterial bushwacking through a microtubule jungle.
Science
314 (5801):931-32.
Gould, Stephen Jay. 1989.
Wonderful life: The Burgess Shale and the nature of history.
New York: W. W. Norton.
Graham, J. P., J. J. Boland, and E. Silbergeld. 2007. Growth-promoting antibiotics in food animal production: An economic analysis.
Public Health Reports
122 (1):79-87.
Gray, C. H., and E. L. Tatum. 1944. X-ray induced growth factor requirements in bacteria.
Proc Natl Acad Sci USA
30 (12):404-10.
Haldane, J.B.S. 1923.
Daedalus; or, Science and the future: A paper read to the Heretics, Cambridge, on February 4th, 1923.
http://www.cscs.umich.edu/~crshalizi/Daedalus.htm
; accessed October 24, 2007.
Hall, Stephen S. 2002.
Invisible frontiers: The race to synthesize a human gene.
New York: Oxford University Press.
Harold, F. M. 2005. Molecules into cells: Specifying spatial architecture.
Microbiol Mol Biol Rev
69 (4):544-64.
Hartwig, Mark. 2002. Whose comfortable myth?
Focus on the Family,
June 2002.
Heitkamp, M. A., J. F. Kane, P. J. Morris, M. Bianchini, M. D. Hale, and G. Bogosian. 1993. Fate in sewage of a recombinant
Escherichia coli
K-12 strain used in the commercial production of bovine somatotropin.
J Ind Microbiol
11 (4): 243-52.
Hejnova, J., U. Dobrindt, R. Nemcova, C. Rusniok, A. Bomba, L. Frangeul, J. Hacker, P. Glaser, P. Sebo, and C. Buchrieser. 2005. Characterization of the flexible genome complement of the commensal
Escherichia coli
strain A0 34/86 (O83:K24:H31).
Microbiology
151 (pt. 2):385-98.
Herring, C. D., A. Raghunathan, C. Honisch, T. Patel, M. K. Applebee, A. R. Joyce, T. J. Albert, F. R. Blattner, D. van den Boom, C. R. Cantor, and B. O. Palsson. 2006. Comparative genome sequencing of
Escherichia coli
allows observation of bacterial evolution on a laboratory timescale.
Nat Genet
38 (12):1406-12.
Hershey, A. D., and M. Chase. 1952. Independent functions of viral protein and nucleic acid in growth of bacteriophage.
J Gen Physiol
36 (1):39-56.
Higgins, Norman Patrick. 2005.
The bacterial chromosome.
Washington, D.C.: ASM Press.
Holmes, Frederick Lawrence. 2001.
Meselson, Stahl, and the replication of DNA: A history of the “most beautiful experiment in biology.”
New Haven: Yale University Press.
Hou, Shaobin, Jimmy H. Saw, Kit Shan Lee, Tracey A. Freitas, Claude Belisle, Yutaka Kawarabayasi, Stuart P. Donachie, Alla Pikina, Michael Y. Galperin, Eugene V. Koonin, Kira S. Makarova, Marina V. Omelchenko, Alexander Sorokin, Yuri I. Wolf, Qing X. Li, Young Soo Keum, Sonia Campbell, Judith Denery, Shin-Ichi Aizawa, Satoshi Shibata, Alexander Malahoff, and Maqsudul Alam. 2004. Genome sequence of the deep-sea ?-proteobacterium
Idiomarina loihiensis
reveals amino acid fermentation as a source of carbon and energy.
Proc Natl Acad Sci USA
101 (52):18036-41.
Humes, Edward. 2007.
Monkey girl: Evolution, education, religion, and the battle for America’s soul.
New York: Ecco.
Inoue, T., R. Shingaki, S. Hirose, K. Waki, H. Mori, and K. Fukui. 2007. Genome-wide screening of genes required for swarming motility in
Escherichia coli
K-12.
J Bacteriol
189(3):950-57.
Jackson, David Archer, and Stephen P. Stich. 1979.
The recombinant DNA debate.
Englewood Cliffs, N.J.: Prentice-Hall.
Jacob, François. 1995.
The statue within: An autobiography.
Cold Spring Harbor, N.Y.: Cold Spring Harbor Laboratory Press.
Jennison, A. V., and N. K. Verma. 2004.
Shigella flexneri
infection: Pathogenesis and vaccine development.
FEMS Microbiol Rev
28 (1):43-58.
Jones, Nancy. 2006.
Round three—“mixing and matching” biological building blocks: Mouse-human chimeras are here!
Center for Bioethics and Human Dignity.
http://www.cbhd.org/resources/biotech/jones_2006-01-20.htm
.
Jones, Shari A., F. A. Chowdhury, et al. 2007. Respiration of
Escherichia coli
in the mouse intestine.
Infect Immun
75:4891-99.
Judson, Horace Freeland. 1996.
The eighth day of creation: Makers of the revolution in biology.
Expanded ed. Cold Spring Harbor, N.Y.: Cold Spring Harbor Laboratory Press.
Jun, S., and B. Mulder. 2006. Entropy-driven spatial organization of highly confined polymers: Lessons for the bacterial chromosome.
Proc Natl Acad Sci USA
103 (33):12388-93.
Kalir, S., S. Mangan, and U. Alon. 2005. A coherent feed-forward loop with a SUM input function prolongs flagella expression in
Escherichia coli. Mol Syst Biol
1:2005.0006.
Kaper, J. B. 2005. Pathogenic
Escherichia coli. Int J Med Microbiol
295 (6-7):355-56.
Karch, H., P. I. Tarr, and M. Bielaszewska. 2005. Enterohaemorrhagic
Escherichia coli
in human medicine.
Int J Med Microbiol
295 (6-7):405-18.
Karp, P. D., I. M. Kessler, A. Shearer, et al. 2007. Multidimensional annotation of the
Escherichia coli.
K-12 genome.
Nucleic Acids Res
35:7577-90.
Kass, Leon. 1997. National Bioethics Advisory Commission. Testimony of March 14. CyberCemetery. University of North Texas Libraries.
http://govinfo.library.unt.edu/nbac/transcripts/1997/3-14-97.pdf
.
Kass, Leon, and James Q. Wilson. 1998.
The ethics of human cloning.
Washington, D.C.: AEI Press.
Kerr, B., M.A. Riley, M.W. Feldman, and B.J. Bohannan. 2002. Local dispersal promotes biodiversity in a real-life game of rock-paper-scissors.
Nature
418 (6894):171-74.
Kirkup, B. C., and M. A. Riley. 2004. Antibiotic-mediated antagonism leads to a bacterial game of rock-paper-scissors in vivo.
Nature
428 (6981):412-14.
Kobayashi, I. 2001. Behavior of restriction-modification systems as selfish mobile elements and their impact on genome evolution.
Nucleic Acids Res
29 (18):3742-56.
Krawinkel, M.B. 2007. What we know and don’t know about Golden Rice.
Nat Biotechnol
25 (6):623.
Krimsky, Sheldon. 1982.
Genetic alchemy: The social history of the recombinant DNA controversy.
Cambridge, Mass.: MIT Press.
Kropotkin, Petr Alekseevich. 1919.
Mutual aid: A factor of evolution.
New York: Alfred A. Knopf.
Kurata, H., H. El-Samad, R. Iwasaki, H. Ohtake, J. C. Doyle, I. Grigorova, C. A. Gross, and M. Khammash. 2006. Module-based analysis of robustness tradeoffs in the heat shock response system.
PLoS Comput Biol
2 (7):e59.
Kussell, E., R. Kishony, N. Q. Balaban, and S. Leibler. 2005. Bacterial persistence: A model of survival in changing environments.
Genetics
169 (4):1807-14.
La Duc, M. T., K. Venkateswaran, R. Sumner, and D. Pierson. 2004. Characterization and monitoring of microbes in the international space station drinking water. Beacon eSpace. Jet Propulsion Laboratory.
http://hdl.handle.net/2014/37245
.
Lamarck, Jean Baptiste Pierre Antoine de Monet de. 1984.
Zoological philosophy: An exposition with regard to the natural history of animals.
Chicago: University of Chicago Press.
Lambert, C., K. J. Evans, R. Till, L. Hobley, M. Capeness, S. Rendulic, S. C. Schuster, S. Aizawa, and R. E. Sockett. 2006. Characterizing the flagellar filament and the role of motility in bacterial prey-penetration by
Bdellovibrio bacteriovorus. Mol Microbiol
60 (2):274-86.
Lawrence, J. G., and H. Ochman. 1998. Molecular archaeology of the
Escherichia coli
genome.
Proc Natl Acad Sci USA
95 (16):9413-17.
Lawrence, S. 2007a. Agbiotech booms in emerging nations.
Nat Biotechnol
25 (3):271.
———. 2007b. State of the biotech sector—2006.
Nat Biotechol
25:706.
Lederberg, J. 1946. Bacterial genetics. Joshua Lederberg: Biomedical Science and the Public Interest. National Library of Medicine.
http://profiles.nlm.nih.gov/hmd/lederberg/bacterial/html
.
———. 1960. Exobiology: Approaches to life beyond the earth.
Science
132 (3424):393-400.
———. 1963. Life beyond Earth.
Stanford Today,
Winter.
———. 1987. Genetic recombination in bacteria: A discovery account.
Annu Rev Genet
21:23-46.
Lederberg, J., and E. M. Lederberg. 1952. Replica plating and indirect selection of bacterial mutants.
J Bacteriol
63 (3):399-406.
Lenski, R. 2003. The ecology, genetics and evolution of bacteria in an experimental setting.
Curr Biol
13 (12):R466-67.
Lerat, E., V. Daubin, H. Ochman, and N. A. Moran. 2005. Evolutionary origins of genomic repertoires in bacteria.
PLoS Biol
3 (5):e130.
Levskaya, A., A. A. Chevalier, J. J. Tabor, Z. B. Simpson, L. A. Lavery, M. Levy, E. A. Davidson, A. Scouras, A. D. Ellington, E. M. Marcotte, and C. A. Voigt. 2005. Synthetic biology: Engineering
Escherichia coli
to see light.
Nature
438 (7067):441-42.
Levy, Stuart B. 2002.
The antibiotic paradox: How the misuse of antibiotics destroys their curative powers.
2nd ed. Cambridge, Mass.: Perseus.
Lewis, K. 2005. Persister cells and the riddle of biofilm survival.
Biochemistry
(
Mosc
) 70 (2):267-74.
———. 2007. Persister cells, dormancy, and infectious disease.
Nat Rev Microbiol
5 (1):48-56.
Lim, H. N., and A. van Oudenaarden. 2007. A multistep epigenetic switch enables the stable inheritance of DNA methylation states.
Nat Genet
39 (2):269-75.
Lumsden, Richard D. 1994. Not so blind a watchmaker.
Creation Research Society Quarterly Journal
31 (1).
Luria, S. E. 1984.
A slot machine, a broken test tube: An autobiography.
Alfred P. Sloan Foundation Series. New York: Harper & Row.
Luria, S. E., and M. Delbrück. 1943. Mutations of bacteria from virus sensitivity to virus resistance.
Genetics
28(6):491-511.
Luria, S. E., M. Delbrück, and T. F. Anderson. 1943. Electron microscope studies of bacterial viruses.
J Bacteriol
46 (1):57-77.
Ma, H. W., and A. P. Zeng. 2003. The connectivity structure, giant strong component and centrality of metabolic networks.
Bioinformatics
19 (11):1423-30.
Margolin, W. 2005. FtsZ and the division of prokaryotic cells and organelles.
Nat Rev Mol Cell Biol
6 (11):862-71.